Mycobacterium
From Wikipedia, the free encyclopedia
Mycobacterium | |
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TEM micrograph of M. tuberculosis. | |
Scientific classification | |
Kingdom: | Bacteria |
Phylum: | Actinobacteria |
Order: | Actinomycetales |
Suborder: | Corynebacterineae |
Family: | Mycobacteriaceae |
Genus: | Mycobacterium Lehmann & Neumann 1896 |
Species | |
See below. |
Microbiologic characteristics
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Mycobacterial cell wall: 1-outer lipids, 2-mycolic acid, 3-polysaccharides (arabinogalactan), 4-peptidoglycan, 5-plasma membrane, 6-lipoarabinomannan (LAM), 7-phosphatidylinositol mannoside, 8-cell wall skeleton
Many Mycobacterium species adapt readily to growth on very simple substrates, using ammonia or amino acids as nitrogen sources and glycerol as a carbon source in the presence of mineral salts. Optimum growth temperatures vary widely according to the species and range from 25 °C to over 50 °C.
Some species can be very difficult to culture (i.e. they are fastidious), sometimes taking over two years to develop in culture.[citation needed] Further, some species also have extremely long reproductive cycles — M. leprae, may take more than 20 days to proceed through one division cycle (for comparison, some E. coli strains take only 20 minutes), making laboratory culture a slow process.[1] In addition, the availability of genetic manipulation techniques still lags far behind that of other bacterial species.[6]
A natural division occurs between slowly– and rapidly–growing species. Mycobacteria that form colonies clearly visible to the naked eye within seven days on subculture are termed rapid growers, while those requiring longer periods are termed slow growers. Mycobacteria cells are straight or slightly curved rods between 0.2 and 0.6 µm wide by 1.0 and 10 µm long.
Pigmentation
Some mycobacteria produce carotenoid pigments without light. Others require photoactivation for pigment production.- Photochromogens (Group I)
- Produce nonpigmented colonies when grown in the dark and pigmented colonies only after exposure to light and reincubation.
- Ex: M. kansasii, M. marinum, M. simiae.
- Scotochromogens (Group II)
- Produce deep yellow to orange colonies when grown in the presence of either the light or the dark.
- Ex: M. scrofulaceum, M. gordonae, M. xenopi, M. szulgai.
- Non-chromogens (Groups III & IV)
- Nonpigmented in the light and dark or have only a pale yellow, buff or tan pigment that does not intensify after light exposure.
- Ex: M. tuberculosis, M. avium-intra-cellulare, M. bovis, M. ulcerans
- Ex: M. fortuitum, M. chelonae
Staining characteristics
Mycobacteria are classical acid-fast organisms.[7] Stains used in evaluation of tissue specimens or microbiological specimens include Fite's stain, Ziehl-Neelsen stain, and Kinyoun stain.Mycobacteria appear phenotypically most closely related to members of Nocardia, Rhodococcus and Corynebacterium.
Ecological characteristics
Mycobacteria are widespread organisms, typically living in water (including tap water treated with chlorine) and food sources. Some, however, including the tuberculosis and the leprosy organisms, appear to be obligate parasites and are not found as free-living members of the genus.Pathogenicity
Mycobacteria can colonize their hosts without the hosts showing any adverse signs. For example, billions of people around the world have asymptomatic infections of M. tuberculosis.Mycobacterial infections are notoriously difficult to treat. The organisms are hardy due to their cell wall, which is neither truly Gram negative nor positive. In addition, they are naturally resistant to a number of antibiotics that disrupt cell-wall biosynthesis, such as penicillin. Due to their unique cell wall, they can survive long exposure to acids, alkalis, detergents, oxidative bursts, lysis by complement, and many antibiotics. Most mycobacteria are susceptible to the antibiotics clarithromycin and rifamycin, but antibiotic-resistant strains have emerged.
As with other bacterial pathogens, surface and secreted proteins of M. tuberculosis contribute significantly to the virulence of this organism. There is an increasing list of extracytoplasmic proteins proven to have a function in the virulence of M. tuberculosis.[8]
Medical classification
Mycobacteria can be classified into several major groups for purpose of diagnosis and treatment: M. tuberculosis complex, which can cause tuberculosis: M. tuberculosis, M. bovis, M. africanum, and M. microti; M. leprae, which causes Hansen's disease or leprosy; Nontuberculous mycobacteria (NTM) are all the other mycobacteria, which can cause pulmonary disease resembling tuberculosis, lymphadenitis, skin disease, or disseminated disease.Mycosides
Mycosides are phenolic alcohols (such as phenolphthiocerol) that were shown to be components of Mycobacterium glycolipids that are termed glycosides of phenolphthiocerol dimycocerosate.[9] There are 18 and 20 carbon atoms in mycosides A, and B, respectively.[10]Genomics
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Comparison of protein orthology in M. tuberculosis, M. leprae, and M. smegmatis, three major model systems in Mycobacterium research[11]
Species
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Phylogenetic Position of the Tubercle Bacilli within the Genus Mycobacterium.
The blue triangle corresponds to tubercle bacilli sequences that are identical or differing by a single nucleotide. The sequences of the genus Mycobacterium that matched most closely to those of M. tuberculosis were retrieved from the BIBI database (http://pbil.univ-lyon.fr/bibi/) and aligned with those obtained for 17 smooth and MTBC strains. The unrooted neighbor-joining tree is based on 1,325 aligned nucleotide positions of the 16S rRNA gene. The scale gives the pairwise distances after Jukes-Cantor correction. Bootstrap support values higher than 90% are indicated at the nodes.
The blue triangle corresponds to tubercle bacilli sequences that are identical or differing by a single nucleotide. The sequences of the genus Mycobacterium that matched most closely to those of M. tuberculosis were retrieved from the BIBI database (http://pbil.univ-lyon.fr/bibi/) and aligned with those obtained for 17 smooth and MTBC strains. The unrooted neighbor-joining tree is based on 1,325 aligned nucleotide positions of the 16S rRNA gene. The scale gives the pairwise distances after Jukes-Cantor correction. Bootstrap support values higher than 90% are indicated at the nodes.
Slowly growing
Mycobacterium tuberculosis complex
- Mycobacterium tuberculosis complex (MTBC) members are causative agents of human and animal tuberculosis. Species in this complex include:
- M. tuberculosis, the major cause of human tuberculosis
- M. bovis
- M. bovis BCG
- M. africanum
- M. canetti
- M. caprae
- M. microti
- M. pinnipedii
Mycobacterium avium complex
- Mycobacterium avium complex (MAC) is a group of species that, in a disseminated infection but not lung infection, used to be a significant cause of death in AIDS patients. The species M. indicus pranii appears to be basal in this complex.[14] Species in this complex include:
- M. avium
- M. avium paratuberculosis, which has been implicated in Crohn's disease in humans and is the causative agent of Johne's disease in cattle and sheep
- M. avium silvaticum
- M. avium "hominissuis"
- M. colombiense
- M. indicus pranii
Mycobacterium gordonae clade
Mycobacterium kansasii clade
Mycobacterium nonchromogenicum/terrae clade
Mycolactone-producing mycobacteria
- M. ulcerans, which causes the "Buruli", or "Bairnsdale, ulcer"
- M. pseudoshottsii
- M. shottsii
Mycobacterium simiae clade
- M. triplex
- M. genavense
- M. florentinum
- M. lentiflavum
- M. palustre
- M. kubicae
- M. parascrofulaceum
- M. heidelbergense
- M. interjectum
- M. simiae
Ungrouped
- M. bohemicum
- M. botniense
- M. branderi
- M. celatum
- M. chimaera
- M. conspicuum
- M. cookii
- M. doricum
- M. farcinogenes
- M. haemophilum
- M. heckeshornense
- M. intracellulare
- M. lacus
- M. leprae, which causes leprosy
- M. lepraemurium
- M. lepromatosis, another (less significant) cause of leprosy, described in 2008
- M. malmoense
- M. marinum, causes a rare disease called Aquarium granuloma.
- M. monacense
- M. montefiorense
- M. murale
- M. nebraskense
- M. saskatchewanense
- M. scrofulaceum
- M. shimoidei
- M. szulgai
- M. tusciae
- M. xenopi
- M. yongonense
Intermediate growth rate
Rapidly growing
Mycobacterium chelonae clade
Mycobacterium fortuitum clade
- M. fortuitum
- M. fortuitum subsp. acetamidolyticum
- M. boenickei
- M. peregrinum
- M. porcinum
- M. senegalense
- M. septicum
- M. neworleansense
- M. houstonense
- M. mucogenicum
- M. mageritense
- M. brisbanense
- M. cosmeticum
Mycobacterium parafortuitum clade
Mycobacterium vaccae clade
CF
Ungrouped
- M. confluentis
- M. flavescens
- M. madagascariense
- M. phlei
- M. smegmatis
- M. thermoresistibile
- M. gadium
- M. komossense
- M. obuense
- M. sphagni
- M. agri
- M. aichiense
- M. alvei
- M. arupense
- M. brumae
- M. canariasense
- M. chubuense
- M. conceptionense
- M. duvalii
- M. elephantis
- M. gilvum
- M. hassiacum
- M. holsaticum
- M. immunogenum
- M. massiliense
- M. moriokaense
- M. psychrotolerans
- M. pyrenivorans
- M. vanbaalenii
- M. pulveris
Ungrouped
- M. arosiense
- M. aubagnense
- M. caprae
- M. chlorophenolicum
- M. fluoroanthenivorans
- M. kumamotonense
- M. novocastrense
- M. parmense
- M. phocaicum
- M. poriferae
- M. rhodesiae
- M. seoulense
- M. tokaiense
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